CRAN Package Check Results for Maintainer ‘Natalia Novoselova <novos65 at mail.ru>’

Last updated on 2022-04-24 03:53:01 CEST.

Package NOTE OK
Biocomb 12
HUM 12
ReorderCluster 12

Package Biocomb

Current CRAN status: OK: 12

Package HUM

Current CRAN status: NOTE: 12

Version: 1.0
Check: R code for possible problems
Result: NOTE
    Calculate3D: no visible global function definition for 'persp'
    CalculateHUM_Ex: no visible global function definition for 'combn'
    CalculateHUM_Plot: no visible global function definition for 'polygon'
    CalculateHUM_Plot: no visible global function definition for 'text'
    CalculateHUM_Plot: no visible global function definition for 'points'
    CalculateHUM_Plot: no visible global function definition for 'lines'
    Undefined global functions or variables:
     combn lines persp points polygon text
    Consider adding
     importFrom("graphics", "lines", "persp", "points", "polygon", "text")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: compiled code
Result: NOTE
    File ‘HUM/libs/HUM.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package ReorderCluster

Current CRAN status: NOTE: 12

Version: 1.0
Check: R code for possible problems
Result: NOTE
    RearrangeData: no visible global function definition for 'rainbow'
    RearrangeData: no visible global function definition for 'hclust'
    RearrangeData: no visible global function definition for
     'as.dendrogram'
    RearrangeData: no visible global function definition for 'heatmap'
    RearrangeData: no visible global function definition for 'pdf'
    RearrangeData: no visible global function definition for
     'colorRampPalette'
    RearrangeData: no visible global function definition for 'legend'
    RearrangeData: no visible global function definition for 'dev.off'
    RearrangeJoseph: no visible global function definition for
     'write.table'
    RearrangeJoseph: no visible global function definition for
     'as.dendrogram'
    RearrangeJoseph: no visible global function definition for
     'order.dendrogram'
    colorDendClass : colLab: no visible global function definition for
     'is.leaf'
    colorDendClass: no visible global function definition for 'dendrapply'
    testData1: no visible global function definition for 'runif'
    testData1: no visible global function definition for 'image'
    testData2: no visible global function definition for 'runif'
    testData2: no visible global function definition for 'image'
    Undefined global functions or variables:
     as.dendrogram colorRampPalette dendrapply dev.off hclust heatmap
     image is.leaf legend order.dendrogram pdf rainbow runif write.table
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.off", "pdf",
     "rainbow")
     importFrom("graphics", "image", "legend")
     importFrom("stats", "as.dendrogram", "dendrapply", "hclust", "heatmap",
     "is.leaf", "order.dendrogram", "runif")
     importFrom("utils", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'A.txt' 'minI.txt' 'minJ.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: compiled code
Result: NOTE
    File ‘ReorderCluster/libs/ReorderCluster.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc