Last updated on 2022-04-24 03:53:03 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| DCD | 2 | 10 | |
| DiffNet | 2 | 6 | 4 |
| func2vis | 12 | ||
| RGBM | 12 |
Current CRAN status: ERROR: 2, NOTE: 10
Version: 0.1.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'DCD-Ex.R' failed
The error most likely occurred in:
> ### Name: DCD
> ### Title: Differential Community Detection for Paired Biological Networks,
> ### for e.g. case vs control
> ### Aliases: DCD
>
> ### ** Examples
>
>
> DCD_output <- DCD()
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
> ## Not run:
> ##D library(igraph)
> ##D g_A <- sample_grg(200, 0.15, torus=FALSE, coords = FALSE)
> ##D g_B <- permute(g_A,c(sample(20),21:200))
> ##D ground_truth <- c(rep(1,20),rep(0,180))
> ##D DCD_output2 <- DCD(g_A = g_A, g_B = g_B, method = "Spectral", mink = 7,
> ##D ground_truth = ground_truth, plot_flag = 1, color = "red",
> ##D iter = 1, cores = 1 )
> ##D
> ## End(Not run)
>
>
>
> cleanEx()
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11562 (sockconn)
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'DCD-Ex.R' failed
The error most likely occurred in:
> ### Name: DCD
> ### Title: Differential Community Detection for Paired Biological Networks,
> ### for e.g. case vs control
> ### Aliases: DCD
>
> ### ** Examples
>
>
> DCD_output <- DCD()
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
> ## Not run:
> ##D library(igraph)
> ##D g_A <- sample_grg(200, 0.15, torus=FALSE, coords = FALSE)
> ##D g_B <- permute(g_A,c(sample(20),21:200))
> ##D ground_truth <- c(rep(1,20),rep(0,180))
> ##D DCD_output2 <- DCD(g_A = g_A, g_B = g_B, method = "Spectral", mink = 7,
> ##D ground_truth = ground_truth, plot_flag = 1, color = "red",
> ##D iter = 1, cores = 1 )
> ##D
> ## End(Not run)
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11845 (sockconn)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: ERROR: 2, NOTE: 6, OK: 4
Version: 1.0-0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘gplots’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0-0
Check: examples
Result: ERROR
Running examples in 'DiffNet-Ex.R' failed
The error most likely occurred in:
> ### Name: diffnet
> ### Title: Detection of Statistically Significant Changes in Paired
> ### Biological Networks
> ### Aliases: diffnet
>
> ### ** Examples
>
> library("DiffNet")
> # this step is optional, it helps speed up calculations, run in parallel on 2 processors
> library(doParallel)
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
> registerDoParallel(2)
> # Run the differential network analysis tehcnique on sample data
> p <- diffnet()
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
detaching 'package:doParallel', 'package:parallel',
'package:iterators', 'package:foreach'
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11433 (sockconn)
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11433 (sockconn)
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0-0
Check: running examples for arch ‘i386’
Result: ERROR
Running examples in 'DiffNet-Ex.R' failed
The error most likely occurred in:
> ### Name: diffnet
> ### Title: Detection of Statistically Significant Changes in Paired
> ### Biological Networks
> ### Aliases: diffnet
>
> ### ** Examples
>
> library("DiffNet")
> # this step is optional, it helps speed up calculations, run in parallel on 2 processors
> library(doParallel)
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
> registerDoParallel(2)
> # Run the differential network analysis tehcnique on sample data
> p <- diffnet()
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
detaching 'package:doParallel', 'package:parallel',
'package:iterators', 'package:foreach'
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11229 (sockconn)
<-CRANwin.fb05.statistik.uni-dortmund.de:11229 (sockconn)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.0-0
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'DiffNet-Ex.R' failed
The error most likely occurred in:
> ### Name: diffnet
> ### Title: Detection of Statistically Significant Changes in Paired
> ### Biological Networks
> ### Aliases: diffnet
>
> ### ** Examples
>
> library("DiffNet")
> # this step is optional, it helps speed up calculations, run in parallel on 2 processors
> library(doParallel)
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
> registerDoParallel(2)
> # Run the differential network analysis tehcnique on sample data
> p <- diffnet()
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
detaching 'package:doParallel', 'package:parallel',
'package:iterators', 'package:foreach'
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11239 (sockconn)
<-CRANwin.fb05.statistik.uni-dortmund.de:11239 (sockconn)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12