Last updated on 2022-04-24 03:53:04 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
netcom | 5 | 4 | 3 |
Current CRAN status: ERROR: 5, NOTE: 4, OK: 3
Version: 2.1.5
Check: examples
Result: ERROR
Running examples in 'netcom-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: best_fit_optim
> ### Title: Empirical parameterization
> ### Aliases: best_fit_optim
>
> ### ** Examples
>
> # Import netcom
> library(netcom)
>
> # Adjacency matrix
> size <- 10
> network <- matrix(sample(c(0,1), size = size^2, replace = TRUE), nrow = size, ncol = size)
>
> # Calculate how similar the input network is to Small-World networks with
> # a rewiring probability of 0.28.
> best_fit_optim(
+ parameter = 0.28,
+ process = "SW",
+ network = network,
+ net_size = 12,
+ net_kind = "matrix",
+ mechanism_kind = "grow",
+ resolution = 100,
+ resolution_min = 0.01,
+ resolution_max = 0.99,
+ reps = 3,
+ power_max = 5,
+ connectance_max = 0.5,
+ divergence_max = 0.5,
+ mutation_max = 0.5,
+ cores = 1,
+ directed = TRUE,
+ method = "DD",
+ cause_orientation = "row",
+ DD_kind = c(
+ "in", "out", "entropy_in", "entropy_out",
+ "clustering_coefficient", "page_rank", "communities"
+ ),
+ DD_weight = 1,
+ max_norm = FALSE,
+ verbose = FALSE
+ )
Error in match.arg(arg = arg, choices = choices, several.ok = several.ok) :
'arg' must be of length 1
Calls: best_fit_optim ... compare_Target -> <Anonymous> -> igraph.match.arg -> match.arg
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 2.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building 'tutorial.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Matrix
Attaching package: 'expm'
The following object is masked from 'package:Matrix':
expm
Attaching package: 'igraph'
The following objects are masked from 'package:dplyr':
as_data_frame, groups, union
The following object is masked from 'package:tibble':
as_data_frame
The following object is masked from 'package:netcom':
compare
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Quitting from lines 200-215 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
'arg' must be of length 1
--- failed re-building 'tutorial.Rmd'
SUMMARY: processing the following file failed:
'tutorial.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 2.1.5
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘ggfortify’ ‘ggplot2’ ‘ggraph’ ‘reshape2’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.5
Check: examples
Result: ERROR
Running examples in ‘netcom-Ex.R’ failed
The error most likely occurred in:
> ### Name: best_fit_optim
> ### Title: Empirical parameterization
> ### Aliases: best_fit_optim
>
> ### ** Examples
>
> # Import netcom
> library(netcom)
>
> # Adjacency matrix
> size <- 10
> network <- matrix(sample(c(0,1), size = size^2, replace = TRUE), nrow = size, ncol = size)
>
> # Calculate how similar the input network is to Small-World networks with
> # a rewiring probability of 0.28.
> best_fit_optim(
+ parameter = 0.28,
+ process = "SW",
+ network = network,
+ net_size = 12,
+ net_kind = "matrix",
+ mechanism_kind = "grow",
+ resolution = 100,
+ resolution_min = 0.01,
+ resolution_max = 0.99,
+ reps = 3,
+ power_max = 5,
+ connectance_max = 0.5,
+ divergence_max = 0.5,
+ mutation_max = 0.5,
+ cores = 1,
+ directed = TRUE,
+ method = "DD",
+ cause_orientation = "row",
+ DD_kind = c(
+ "in", "out", "entropy_in", "entropy_out",
+ "clustering_coefficient", "page_rank", "communities"
+ ),
+ DD_weight = 1,
+ max_norm = FALSE,
+ verbose = FALSE
+ )
Error in match.arg(arg = arg, choices = choices, several.ok = several.ok) :
'arg' must be of length 1
Calls: best_fit_optim ... compare_Target -> <Anonymous> -> igraph.match.arg -> match.arg
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘tutorial.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: Matrix
Attaching package: 'expm'
The following object is masked from 'package:Matrix':
expm
Attaching package: 'igraph'
The following objects are masked from 'package:dplyr':
as_data_frame, groups, union
The following object is masked from 'package:tibble':
as_data_frame
The following object is masked from 'package:netcom':
compare
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Quitting from lines 200-215 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
'arg' must be of length 1
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following file failed:
‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc