Last updated on 2022-04-24 03:53:04 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bumbl | 4 | 8 | |
| holodeck | 12 |
Current CRAN status: ERROR: 4, OK: 8
Version: 1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [129s/141s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(bumbl)
>
> test_check("bumbl")
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '104'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '17'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '20'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '24'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Creating plots for 6 colonies...
Creating plots for 6 colonies...
Creating plots for 6 colonies...
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 41 ]
== Skipped tests ===============================================================
* On CRAN (1)
== Failed tests ================================================================
-- Failure (test-bumbl.R:66:3): no unexpected warnings -------------------------
`bumbl(...)` produced messages.
-- Failure (test-bumbl.R:67:3): no unexpected warnings -------------------------
`bumbl(...)` produced messages.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [68s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bumbl)
>
> test_check("bumbl")
Warning: Search for optimal switchpoint did not converge for colonyID '104'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '104'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '17'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '20'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '24'. Omitting from results.
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Creating plots for 6 colonies...
Creating plots for 6 colonies...
Creating plots for 6 colonies...
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 41 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-bumbl.R:82:3): bumbl works with overdispersed count data ────────
Error in `bumbl(bombus_sub, colonyID = colony, t = week, formula = count ~
week, family = "negbin")`: Model fitting failed for all colonies.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-bumbl.R:82:2
2. │ └─base::withCallingHandlers(...)
3. └─bumbl::bumbl(...)
4. └─rlang::abort("Model fitting failed for all colonies.")
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [148s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bumbl)
>
> test_check("bumbl")
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '104'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '17'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '20'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '24'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Creating plots for 6 colonies...
Creating plots for 6 colonies...
Creating plots for 6 colonies...
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 41 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-bumbl.R:66:3): no unexpected warnings ─────────────────────────
`bumbl(...)` produced messages.
── Failure (test-bumbl.R:67:3): no unexpected warnings ─────────────────────────
`bumbl(...)` produced messages.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [144s/174s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bumbl)
>
> test_check("bumbl")
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '17'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '24'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '104'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '17'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '20'. Omitting from results.
Warning: cannot find valid starting values: please specify some for colonyID '24'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Warning: Search for optimal switchpoint did not converge for colonyID '20'. Omitting from results.
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Creating plots for 6 colonies...
Creating plots for 6 colonies...
Creating plots for 6 colonies...
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 41 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-bumbl.R:66:3): no unexpected warnings ─────────────────────────
`bumbl(...)` produced messages.
── Failure (test-bumbl.R:67:3): no unexpected warnings ─────────────────────────
`bumbl(...)` produced messages.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 12
Version: 0.2.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64