Last updated on 2022-04-24 03:53:07 CEST.
| Package | ERROR | WARN | OK |
|---|---|---|---|
| pulseTD | 2 | 1 | 9 |
Current CRAN status: ERROR: 2, WARN: 1, OK: 9
Version: 0.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘pulseTD-Ex.R’ failed
The error most likely occurred in:
> ### Name: estimateExpression
> ### Title: Estimated Expression
> ### Aliases: estimateExpression
>
> ### ** Examples
>
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) :
there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 63-65 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following file failed:
‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'tutorial.Rmd' using rmarkdown
Loading required package: GenomicFeatures
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
! Package pdftex.def Error: File `d:/RCompile/CRANpkg/local/4.1/pulseTD.Rcheck/
vign_test/pulseTD/vignettes/tutorial_files/figure-latex/plotRatest,any\%20time-
1.pdf' not found.
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
LaTeX failed to compile d:/RCompile/CRANpkg/local/4.1/pulseTD.Rcheck/vign_test/pulseTD/vignettes/tutorial.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See tutorial.log for more info.
--- failed re-building 'tutorial.Rmd'
SUMMARY: processing the following file failed:
'tutorial.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64