Last updated on 2022-04-24 03:53:07 CEST.
| Package | NOTE |
|---|---|
| proteomicdesign | 12 |
Current CRAN status:
Version: 2.0
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: 'MASS'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0
Check: R code for possible problems
Result: NOTE
Ftest.Ttest: no visible binding for global variable 'sd'
Ftest.Ttest: no visible global function definition for 'pt'
Ftest.Ttest: no visible global function definition for 'var'
Ftest.Ttest: no visible global function definition for 'pf'
Ttest: no visible binding for global variable 'sd'
Ttest: no visible global function definition for 'pt'
do.one.experiment: no visible global function definition for
'power.t.test'
do.one.experiment.t: no visible global function definition for
'power.t.test'
optim.two.stage.appr: no visible global function definition for
'mvrnorm'
optim.two.stage.appr: no visible global function definition for 'var'
optim.two.stage.appr: no visible global function definition for 'runif'
optim.two.stage.appr: no visible global function definition for 'pbeta'
optim.two.stage.appr: no visible global function definition for 'optim'
optim.two.stage.group: no visible global function definition for
'mvrnorm'
optim.two.stage.group: no visible global function definition for
'runif'
optim.two.stage.group: no visible global function definition for
'pbeta'
optim.two.stage.group: no visible global function definition for
'optim'
optim.two.stage.single: no visible global function definition for
'mvrnorm'
optim.two.stage.single: no visible global function definition for
'runif'
optim.two.stage.single: no visible global function definition for
'pbeta'
optim.two.stage.single: no visible global function definition for
'optim'
power: no visible global function definition for 'par'
power: no visible global function definition for 'hist'
power.appr: no visible global function definition for 'qt'
power.appr: no visible global function definition for 'pt'
power.appr: no visible global function definition for 'var'
power.appr: no visible global function definition for 'qf'
power.appr: no visible global function definition for 'pf'
power.appr: no visible global function definition for 'dt'
power.appr: no visible global function definition for 'splinefun'
power.appr: no visible global function definition for 'integrate'
power.group.cost: no visible global function definition for 'mvrnorm'
power.group.cost : Ftest.Ttest: no visible binding for global variable
'sd'
power.group.cost : Ftest.Ttest: no visible global function definition
for 'pt'
power.group.cost : Ftest.Ttest: no visible global function definition
for 'var'
power.group.cost : Ftest.Ttest: no visible global function definition
for 'pf'
power.group.cost : do.one.experiment: no visible global function
definition for 'power.t.test'
power.group.cost: no visible global function definition for 'par'
power.group.cost: no visible global function definition for 'hist'
power.single.cost: no visible global function definition for 'mvrnorm'
power.single.cost : Ttest: no visible binding for global variable 'sd'
power.single.cost : Ttest: no visible global function definition for
'pt'
power.single.cost : do.one.experiment.t: no visible global function
definition for 'power.t.test'
power.single.cost: no visible global function definition for 'par'
power.single.cost: no visible global function definition for 'hist'
power.t: no visible global function definition for 'par'
power.t: no visible global function definition for 'hist'
Undefined global functions or variables:
dt hist integrate mvrnorm optim par pbeta pf power.t.test pt qf qt
runif sd splinefun var
Consider adding
importFrom("graphics", "hist", "par")
importFrom("stats", "dt", "integrate", "optim", "pbeta", "pf",
"power.t.test", "pt", "qf", "qt", "runif", "sd",
"splinefun", "var")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0
Check: Rd line widths
Result: NOTE
Rd file 'optim.two.stage.appr.Rd':
\usage lines wider than 90 characters:
optim.two.stage.appr(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, a1.t.min = 0. ... [TRUNCATED]
\examples lines wider than 100 characters:
protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
optim.two.stage.appr(budget=500000,protein=protein,n1=30,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.func ... [TRUNCATED]
Rd file 'optim.two.stage.group.Rd':
\usage lines wider than 90 characters:
optim.two.stage.group(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a1 ... [TRUNCATED]
\examples lines wider than 100 characters:
protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
optim.two.stage.group(budget=500000,protein=protein,n1=60,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.fun ... [TRUNCATED]
Rd file 'optim.two.stage.single.Rd':
\usage lines wider than 90 characters:
optim.two.stage.single(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a ... [TRUNCATED]
\examples lines wider than 100 characters:
protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4))
optim.two.stage.single(budget=500000,artifact=rep(1,5),protein=protein,n1=30,iter.number=1,assaycost2.function=assaycost2,assaycost3.fu ... [TRUNCATED]
Rd file 'power.group.cost.Rd':
\usage lines wider than 90 characters:
power.group.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
\examples lines wider than 100 characters:
protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
power.group.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functio ... [TRUNCATED]
Rd file 'power.single.cost.Rd':
\usage lines wider than 90 characters:
power.single.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
\examples lines wider than 100 characters:
protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
power.single.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functi ... [TRUNCATED]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64