Detection of runs of homozygosity and of heterozygosity
in diploid genomes using two methods: sliding windows (Purcell et al (2007)
<doi:10.1086/519795>) and consecutive runs (Marras et al (2015)
<doi:10.1111/age.12259>).
| Version: |
0.9.6 |
| Depends: |
R (≥ 3.0.0) |
| Imports: |
plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table |
| LinkingTo: |
Rcpp |
| Suggests: |
testthat, knitr, rmarkdown, prettydoc |
| Published: |
2019-10-24 |
| Author: |
Filippo Biscarini [aut, cre],
Paolo Cozzi [aut],
Giustino Gaspa [aut],
Gabriele Marras [aut] |
| Maintainer: |
Filippo Biscarini <filippo.biscarini at gmail.com> |
| BugReports: |
https://github.com/bioinformatics-ptp/detectRUNS/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| CRAN checks: |
detectRUNS results |