To cite flowr in publications use:

Seth S, Amin SB, Song X, Mao X, Sun H, Verhaak RG, Futreal AP, Zhang J (2015). “Flowr: Robust and efficient pipelines using a simple language-agnostic approach.” bioRxiv. doi: 10.1101/029710, http://biorxiv.org/content/early/2015/10/22/029710.

As flowr is continually evolving, you may want to cite its version number. Find it with 'help(package=flowr)'.

Corresponding BibTeX entry:

  @Article{,
    author = {Sahil Seth and Samirkumar B Amin and Xingzhi Song and
      Xizeng Mao and Huandong Sun and Roeland GW Verhaak and Andrew PA
      Futreal and Jianhua Zhang},
    title = {Flowr: Robust and efficient pipelines using a simple
      language-agnostic approach},
    journal = {bioRxiv},
    year = {2015},
    doi = {10.1101/029710},
    publisher = {Cold Spring Harbor Labs Journals},
    url = {http://biorxiv.org/content/early/2015/10/22/029710},
  }