Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>.
Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.5.0), ggplot2 (≥ 3.2.0) |
| Imports: |
alakazam (≥ 1.0.0), shazam (≥ 1.0.0), dplyr (≥ 0.8.1), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, stats, stringi, tidyr (≥ 0.1.0) |
| Suggests: |
knitr, rmarkdown, testthat |
| Published: |
2020-05-13 |
| Author: |
Daniel Gadala-Maria [aut],
Susanna Marquez [aut],
Moriah Cohen [aut],
Jason Vander Heiden [aut, cre],
Gur Yaari [aut],
Steven Kleinstein [aut, cph] |
| Maintainer: |
Jason Vander Heiden <jason.vanderheiden at gmail.com> |
| BugReports: |
https://bitbucket.org/kleinstein/tigger/issues |
| License: |
AGPL-3 |
| URL: |
http://tigger.readthedocs.io |
| NeedsCompilation: |
no |
| Citation: |
tigger citation info |
| Materials: |
README NEWS |
| CRAN checks: |
tigger results |