treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.

Version:	0.5.0
Depends:	ape (≥ 5.0), limSolve (≥ 1.5.5.0)
Suggests:	lubridate, ggplot2, foreach, iterators, mgcv, knitr, rmarkdown
Published:	2020-01-26
Author:	Erik Volz [aut, cre]
Maintainer:	Erik Volz <erik.volz at gmail.com>
License:	GPL-2
NeedsCompilation:	no
Materials:	README
CRAN checks:	treedater results

Documentation:

Reference manual:	treedater.pdf
Vignettes:	H3N2

Downloads:

Package source:	treedater_0.5.0.tar.gz
Windows binaries:	r-devel: treedater_0.5.0.zip, r-release: treedater_0.5.0.zip, r-oldrel: treedater_0.5.0.zip
macOS binaries:	r-release (arm64): treedater_0.5.0.tgz, r-oldrel (arm64): treedater_0.5.0.tgz, r-release (x86_64): treedater_0.5.0.tgz, r-oldrel (x86_64): treedater_0.5.0.tgz
Old sources:	treedater archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=treedater to link to this page.