vegtable 0.1.7
New Features
- New function
used_concepts() to extract taxon concepts that are occurring in the plot observations.
- New function
cover_trans() in replacement of transform()
- New slot
syntax in vegtable objects.
show() and print() methods for objects vegtable, coverconvert, and shaker.
Improvements
- In function
make_cocktail(), names of syntaxa are allowed to start with numerical values.
- Function
write_juice() includes a messages when working and with some metadata for cross-check when importing in Juice.
- New arguments in function
taxa2samples() setting the levels to be included in output object (include_levels) and to remove taxa without levels (na.rm).
- Application of
subset() extended to content in slot relations.
- Function
vegtable2kml() was deprecated to resolve dependencies on GIS packages associated to package plotKML.
- Validity checks allow plots in slot header without records in samples.
- Function
summary() also providing number of plots with records.
- Function
transform() deprecated and replaced by cover_trans().
Bug Fixes
- Files written by
write_juice() in Linux are now readable in Windows.
- In
clean() objects with no entries resulted in invalid objects.
- Bug in
count_taxa() for aggregating ranks with missing records for lower taxa.
vegtable 0.1.6
Improvements
- Documentation implemented in
roxygen2.
- New argument
preserve_ids in function add_releves().
Bug Fixes
- Function
count_taxa() adapted to the current package taxlist.
vegtable 0.1.5
New Features
- New function
relation2header().
- New functions
trait_stats() and trait_proportion().
Improvements
- New argument
add_traits in function taxa2samples().
- Output of
count_taxa(), formula-method, indicates the counted rank in the output.
- Adjusted settings in function
write_juice() for general cases.
- Argument
as_matrix in function crosstable() alternating matrix or data.frame as output.
- New arguments
suffix and in_header for the function count_taxa().
Bug Fixes
- Function
taxa2samples() was not properly working when taxlist had taxon concepts without level information.
vegtable 0.1.4
New Features
- New data set
aspect_conv.
- New function
taxa2samples() for changing record names by their respective accepted names.
- Function
count_taxa() implemented for vegtable objects.
Improvements
- Updated data set
Kenya_veg Including hierarchical ranks.
Bugs
- Function
cross2db was not working properly for tables with only one column
vegtable 0.1.3
Improvements
- A method for
numeric values in function transform().
vegtable 0.1.2
New Features
- File inst/ChangeLog replaced by NEWS.md.
- Method
match_names() for vegtable objects.
- New method
layers2samples().
- New method
add_releves(), adding releves from data frames into vegtable objects.
Improvements
- No column
LayerID in prototype for vegtable objects.
NA values are allowed for layers in slot samples.- Layers are not any more restricted to single plots.
- Orphaned entries in slot
layers will be deleted by function clean().
- Argument
match_header included in function veg_relation().
- Validity check is not accepting
NA values in TaxonUsageID at slot samples.
- Validity check tests also the values of relations matching header with the respective relation.
vegtable 0.1.1
New Features
- A method for function
aggregate.
- Slot
layers added to vegtable objects.
Improvements
- Method
subset working similarly to taxlist::subset.
- Function
clean does not modify slot species.
- Function
crosstable access also to taxon traits.
- New argument
use_nas for function crosstable.
vegtable 0.1.0
New Features