diveRsity: A Comprehensive, General Purpose Population Genetics Analysis
Package
Allows the calculation of both genetic diversity partition
statistics, genetic differentiation statistics, and locus informativeness
for ancestry assignment.
It also provides users with various option to calculate
bootstrapped 95\% confidence intervals both across loci,
for pairwise population comparisons, and to plot these results interactively.
Parallel computing capabilities and pairwise results without
bootstrapping are provided.
Also calculates F-statistics from Weir and Cockerham (1984).
Various plotting features are provided, as well as Chi-square tests of
genetic heterogeneity.
Functionality for the calculation of various diversity parameters is
possible for RAD-seq derived SNP data sets containing thousands of marker loci.
A shiny application for the development of microsatellite multiplexes is
also available.
| Version: |
1.9.90 |
| Depends: |
R (≥ 3.0.0) |
| Imports: |
ggplot2, shiny, qgraph, Rcpp, methods, stats, grid |
| LinkingTo: |
Rcpp |
| Suggests: |
xlsx, sendplot, plotrix, parallel, HWxtest |
| Published: |
2017-04-04 |
| Author: |
Kevin Keenan |
| Maintainer: |
Kevin Keenan <kkeenan02 at qub.ac.uk> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
http://diversityinlife.weebly.com/ |
| NeedsCompilation: |
yes |
| Citation: |
diveRsity citation info |
| CRAN checks: |
diveRsity results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
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