geneListPie: Profiling a gene list into GOslim or KEGG function pie
"geneListPie" package is for mapping a gene list to
function categories defined in GOSlim or Kegg. The results can
be plotted as a pie chart to provide a quick view of the genes
distribution of the gene list among the function categories.
The gene list must contain a list of gene symbols. The package
contains a set of pre-processed gene sets obtained from Gene
Ontology and MSigDB including human, mouse, rat and yeast. To
provide a high level concise view, only GO slim and kegg are
provided. The gene sets are regulared updated. User can also
use customized gene sets. User can use the R Pie() or Pie3D()
function for plotting the pie chart. Users can also choose to
output the gene function mapping results and use external
software such as Excel(R) for ploting.
| Version: |
1.0 |
| Depends: |
R (≥ 2.10) |
| Suggests: |
plotrix |
| Published: |
2012-07-23 |
| Author: |
Xutao Deng |
| Maintainer: |
Xutao Deng <xutaodeng at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| CRAN checks: |
geneListPie results |
Documentation:
Downloads:
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