hbm: Hierarchical Block Matrix Analysis
A package for building hierarchical block matrices from association matrices and for performing multi-scale analysis. It specifically targets chromatin contact maps, generated from high-throughput chromosome conformation capture data, such as 5C and Hi-C, and provides methods for detecting movements and for computing chain hierarchy and region communicability across scales.
| Version: |
1.0 |
| Depends: |
R (≥ 3.0.2) |
| Imports: |
Matrix, foreach, doParallel |
| Published: |
2015-02-01 |
| Author: |
Yoli Shavit |
| Maintainer: |
Yoli Shavit <ys388 at cam.ac.uk> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
hbm results |
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