lymphclon: Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates

We provide a clonality score estimator that takes full advantage of the multi-biological-replicate structure of modern sequencing experiments; it specifically takes into account the reality that, typically, the clonal coverage is well below 0.1%.

Version: 1.3.0
Depends: R (≥ 2.15.0)
Imports: MASS, expm, corpcor
Published: 2014-11-11
Author: Yi Liu [aut, cre], Richard A. Olshen [aut], Andrew Z. Fire [ctb], Scott D. Boyd [ctb]
Maintainer: Yi Liu <liuyipei at gmail.com>
License: LGPL-2
NeedsCompilation: no
CRAN checks: lymphclon results

Documentation:

Reference manual: lymphclon.pdf

Downloads:

Package source: lymphclon_1.3.0.tar.gz
Windows binaries: r-devel: lymphclon_1.3.0.zip, r-release: lymphclon_1.3.0.zip, r-oldrel: lymphclon_1.3.0.zip
macOS binaries: r-release (arm64): lymphclon_1.3.0.tgz, r-oldrel (arm64): lymphclon_1.3.0.tgz, r-release (x86_64): lymphclon_1.3.0.tgz, r-oldrel (x86_64): lymphclon_1.3.0.tgz
Old sources: lymphclon archive

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