myTAI: Evolutionary Transcriptomics
Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).
| Version: | 0.9.3 |
| Depends: | R (≥ 3.1.1) |
| Imports: | Rcpp (≥ 0.12.0), nortest (≥ 1.0-2), fitdistrplus (≥ 1.0-2), parallel (≥ 3.1.1), foreach (≥ 1.4.2), doParallel (≥ 1.0.8), dplyr (≥ 0.3.0), RColorBrewer (≥ 1.1-2), taxize (≥ 0.6.0), methods (≥ 3.1.1), graphics (≥ 3.1.1), stats (≥ 3.1.1), grDevices (≥ 3.1.1), utils (≥ 3.1.1), reshape2 (≥ 1.4.1), ggplot2 (≥ 1.0.1), readr (≥ 0.2.2), tibble, scales, gridExtra, edgeR |
| LinkingTo: | Rcpp, RcppArmadillo, cpp11 |
| Suggests: | knitr (≥ 1.6), rmarkdown (≥ 0.3.3), devtools (≥ 1.6.1), testthat (≥ 0.9.1), mgcv |
| Published: | 2021-02-24 |
| Author: | Hajk-Georg Drost 
[aut, cre] |
| Maintainer: | Hajk-Georg Drost <hajk-georg.drost at tuebingen.mpg.de> |
| BugReports: | https://github.com/drostlab/myTAI/issues |
| License: | GPL-3 |
| URL: | https://github.com/drostlab/myTAI |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Citation: | myTAI citation info |
| Materials: | README NEWS |
| CRAN checks: | myTAI results |
Documentation:
Downloads:
| Package source: | myTAI_0.9.3.tar.gz |
| Windows binaries: | r-devel: myTAI_0.9.3.zip, r-release: myTAI_0.9.3.zip, r-oldrel: myTAI_0.9.3.zip |
| macOS binaries: | r-release (arm64): myTAI_0.9.3.tgz, r-oldrel (arm64): myTAI_0.9.3.tgz, r-release (x86_64): myTAI_0.9.3.tgz, r-oldrel (x86_64): myTAI_0.9.3.tgz |
| Old sources: | myTAI archive |
Linking:
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