Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.
| Version: | 2.5 |
| Depends: | R (≥ 3.0.0) |
| Imports: | Rcpp (≥ 1.0.0), ontologyIndex (≥ 2.0) |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown, paintmap |
| Published: | 2021-02-10 |
| Author: | Daniel Greene |
| Maintainer: | Daniel Greene <dg333 at cam.ac.uk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | ontologySimilarity results |
| Reference manual: | ontologySimilarity.pdf |
| Vignettes: |
Gene Ontology data objects Examples Introduction |
| Package source: | ontologySimilarity_2.5.tar.gz |
| Windows binaries: | r-devel: ontologySimilarity_2.5.zip, r-release: ontologySimilarity_2.5.zip, r-oldrel: ontologySimilarity_2.5.zip |
| macOS binaries: | r-release (arm64): ontologySimilarity_2.5.tgz, r-oldrel (arm64): ontologySimilarity_2.5.tgz, r-release (x86_64): ontologySimilarity_2.5.tgz, r-oldrel (x86_64): ontologySimilarity_2.5.tgz |
| Old sources: | ontologySimilarity archive |
| Reverse imports: | SimReg |
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