protr: Generating Various Numerical Representation Schemes for Protein Sequences

Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download> for more information.

Version: 1.6-2
Depends: R (≥ 3.0.2)
Suggests: knitr, rmarkdown, Biostrings, GOSemSim, foreach, doParallel, org.Hs.eg.db
Published: 2019-05-18
Author: Nan Xiao ORCID iD [aut, cre], Qing-Song Xu [aut], Dong-Sheng Cao [aut]
Maintainer: Nan Xiao <me at nanx.me>
BugReports: https://github.com/nanxstats/protr/issues
License: BSD_3_clause + file LICENSE
URL: https://nanx.me/protr/, https://github.com/nanxstats/protr, http://protr.org
NeedsCompilation: no
SystemRequirements: ncbi-blast+ (see <https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download>)
Citation: protr citation info
Materials: README NEWS
CRAN checks: protr results

Documentation:

Reference manual: protr.pdf
Vignettes: protr: R package for generating various numerical representation schemes of protein sequences

Downloads:

Package source: protr_1.6-2.tar.gz
Windows binaries: r-devel: protr_1.6-2.zip, r-release: protr_1.6-2.zip, r-oldrel: protr_1.6-2.zip
macOS binaries: r-release (arm64): protr_1.6-2.tgz, r-oldrel (arm64): protr_1.6-2.tgz, r-release (x86_64): protr_1.6-2.tgz, r-oldrel (x86_64): protr_1.6-2.tgz
Old sources: protr archive

Reverse dependencies:

Reverse imports: HPiP, PredCRG, surfaltr

Linking:

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