vegan: Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

Version:	2.6-2
Depends:	permute (≥ 0.9-0), lattice, R (≥ 3.4.0)
Imports:	MASS, cluster, mgcv
Suggests:	parallel, tcltk, knitr, markdown
Published:	2022-04-17
Author:	Jari Oksanen [aut, cre], Gavin L. Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [aut], Matt Barbour [aut], Michael Bedward [aut], Ben Bolker [aut], Daniel Borcard [aut], Gustavo Carvalho [aut], Michael Chirico [aut], Miquel De Caceres [aut], Sebastien Durand [aut], Heloisa Beatriz Antoniazi Evangelista [aut], Rich FitzJohn [aut], Michael Friendly [aut], Brendan Furneaux [aut], Geoffrey Hannigan [aut], Mark O. Hill [aut], Leo Lahti [aut], Dan McGlinn [aut], Marie-Helene Ouellette [aut], Eduardo Ribeiro Cunha [aut], Tyler Smith [aut], Adrian Stier [aut], Cajo J.F. Ter Braak [aut], James Weedon [aut]
Maintainer:	Jari Oksanen <jhoksane at gmail.com>
BugReports:	https://github.com/vegandevs/vegan/issues
License:	GPL-2
URL:	https://github.com/vegandevs/vegan
NeedsCompilation:	yes
Materials:	NEWS
In views:	Environmetrics, Psychometrics, Spatial
CRAN checks:	vegan results

Documentation:

Reference manual:	vegan.pdf
Vignettes:	Design decisions and implementation Diversity analysis in vegan Introduction to ordination in vegan Partition of Variation vegan FAQ

Downloads:

Package source:	vegan_2.6-2.tar.gz
Windows binaries:	r-devel: vegan_2.6-2.zip, r-release: vegan_2.6-2.zip, r-oldrel: vegan_2.6-2.zip
macOS binaries:	r-release (arm64): vegan_2.6-2.tgz, r-oldrel (arm64): vegan_2.6-2.tgz, r-release (x86_64): vegan_2.5-7.tgz, r-oldrel (x86_64): vegan_2.6-2.tgz
Old sources:	vegan archive

Reverse dependencies:

Reverse depends:	analogue, ausplotsR, BBI, BDMMAcorrect, betaper, BiodiversityR, bipartite, blender, cml, cocorresp, CommEcol, CommunityCorrelogram, dave, diathor, easyCODA, FD, FreeSortR, iDynoR, isopam, KnowBR, metacom, MiSPU, mpmcorrelogram, ordiBreadth, OTUbase, otuSummary, paleoMAS, picante, RAM, rareNMtests, rdacca.hp, segRDA, SRS, vegan3d
Reverse imports:	abseqR, adegenet, adespatial, AlleleShift, animalcules, aPCoA, Arothron, barcodetrackR, BAT, bingat, biogeo, biosurvey, CAGEr, cassandRa, cati, CNVRG, codyn, combi, comsimitv, DarkDiv, dartR, Demerelate, dispRity, DiversityOccupancy, dynRB, ecospat, EcotoneFinder, edmcr, entropart, EvaluateCore, evolqg, fieldRS, flowCHIC, flowCyBar, forams, fundiversity, gdm, GOCompare, goeveg, GPA, graph4lg, grapherator, GRNNs, GUniFrac, HierDpart, hilldiv, HMP, HTSSIP, iCAMP, LinkHD, Linnorm, Maaslin2, MapeBay, MatrixQCvis, mcMST, MEAL, MEclustnet, MEDITS, memgene, metacoder, metavizr, metrix, mFD, mia, microbial, microbiome, microbiomeExplorer, MicrobiotaProcess, microeco, MIGSA, mirt, mixKernel, Momocs, MorphoTools2, NADA2, naturaList, netassoc, netcom, NicheBarcoding, node2vec, nodiv, NST, omicplotR, paco, pagoo, palaeoSig, PathoStat, patternize, PCPS, pez, phyloregion, phyloseq, PolicyPortfolios, POMA, PopGenReport, poppr, powerTCR, ProjectionBasedClustering, QFASA, RaceID, Rarefy, recluster, rich, rioja, RTCC, RVAideMemoire, RVenn, scRepertoire, shapeR, sharpshootR, SigTree, smartsnp, soundecology, spaceNet, SparseLPM, spmoran, SSP, SYNCSA, synergyfinder, tapnet, TimeSeriesExperiment, tspmeta, vcfR, vegclust, zetadiv
Reverse suggests:	abdiv, bcp, betapart, bipartiteD3, clonotypeR, codep, curatedMetagenomicData, dimRed, dissCqN, divDyn, EcoIndR, ecolottery, ecospace, ecotraj, eHOF, enveomics.R, GCalignR, glottospace, GOsummaries, hagis, idar, interactiveDisplay, ISAnalytics, liayson, loe, mefa, metagenomeSeq, MiRKAT, MMUPHin, permute, phylotools, Platypus, primer, ProcMod, pRoloc, propr, PtH2O2lipids, raptr, Rraven, RRphylo, sads, shipunov, SoundShape, spaa, taxize, tidypaleo, vegdata, vegtable, WeightedCluster, yaImpute
Reverse enhances:	labdsv

Linking:

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