Last updated on 2022-04-24 03:52:54 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| gdata | 1 | 4 | 7 | |
| genetics | 1 | 11 | ||
| gmodels | 4 | 8 | ||
| gtools | 4 | 8 | ||
| mcgibbsit | 12 | |||
| namespace | 12 | |||
| session | 12 |
Current CRAN status: ERROR: 1, WARN: 4, OK: 7
Version: 2.18.0
Check: Rd files
Result: WARN
checkRd: (7) rename.vars.Rd:50: invalid email address: macq\@llnl.gov
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.18.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘reshape’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.18.0
Check: examples
Result: ERROR
Running examples in 'gdata-Ex.R' failed
The error most likely occurred in:
> ### Name: read.xls
> ### Title: Read Excel files
> ### Aliases: read.xls xls2csv xls2tab xls2tsv xls2sep
> ### Keywords: file
>
> ### ** Examples
>
>
> # iris.xls is included in the gregmisc package for use as an example
> xlsfile <- file.path(path.package('gdata'),'xls','iris.xls')
> xlsfile
[1] "D:/RCompile/CRANpkg/lib/4.2/gdata/xls/iris.xls"
>
> iris <- read.xls(xlsfile) # defaults to csv format
Error in findPerl(perl, verbose = verbose) :
perl executable not found. Use perl= argument to specify the correct path.
Calls: read.xls -> xls2sep -> findPerl
Error in file.exists(tfn) : invalid 'file' argument
Calls: read.xls -> file.exists
Execution halted
Flavor: r-release-windows-x86_64
Version: 2.18.0
Check: tests
Result: ERROR
Running 'runRUnitTests.R' [1s]
Running 'test.humanReadable.R' [1s]
Comparing 'test.humanReadable.Rout' to 'test.humanReadable.Rout.save' ...4,5c4
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLX' (Excel 97-2004) files.
---
> gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
7,12c6
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLSX' (Excel 2007+) files.
<
< gdata: Run the function 'installXLSXsupport()'
< gdata: to automatically download and install the perl
< gdata: libaries needed to support Excel XLS and XLSX formats.
---
> gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Running 'test.read.xls.R' [1s]
Running 'test.reorder.factor.R' [1s]
Comparing 'test.reorder.factor.Rout' to 'test.reorder.factor.Rout.save' ...15,16c15
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLX' (Excel 97-2004) files.
---
> gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
18,23c17
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLSX' (Excel 2007+) files.
<
< gdata: Run the function 'installXLSXsupport()'
< gdata: to automatically download and install the perl
< gdata: libaries needed to support Excel XLS and XLSX formats.
---
> gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Running 'test.write.fwf.eol.R' [1s]
Running 'tests.write.fwf.R' [1s]
Comparing 'tests.write.fwf.Rout' to 'tests.write.fwf.Rout.save' ...11,12c11
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLX' (Excel 97-2004) files.
---
> gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
14,19c13
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLSX' (Excel 2007+) files.
<
< gdata: Run the function 'installXLSXsupport()'
< gdata: to automatically download and install the perl
< gdata: libaries needed to support Excel XLS and XLSX formats.
---
> gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Running the tests in 'tests/test.read.xls.R' failed.
Complete output:
> library(gdata)
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLX' (Excel 97-2004) files.
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.
gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.
Attaching package: 'gdata'
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
>
> if ( ! 'XLSX' %in% xlsFormats() )
+ {
+ try( installXLSXsupport() )
+ }
Error in system(cmd, intern = TRUE) :
Calls: %in% -> xlsFormats -> system
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: NOTE: 1, OK: 11
Version: 1.3.8.1.3
Check: Rd cross-references
Result: NOTE
Undeclared package ‘bootstrap’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: WARN: 4, OK: 8
Version: 2.18.1
Check: Rd files
Result: WARN
checkRd: (7) estimable.Rd:97: invalid email address: bxc\@novonordisk.com
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.18.1
Check: Rd cross-references
Result: NOTE
Undeclared package ‘rms’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: WARN: 4, NOTE: 8
Version: 3.9.2
Check: R code for possible problems
Result: NOTE
Found the following possibly unsafe calls:
File 'gtools/R/unByteCode.R':
unlockBinding(name, env = env)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.9.2
Check: Rd files
Result: WARN
checkRd: (7) checkRVersion.Rd:46: invalid email address: gregory.warnes@rochester.edu>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 12
Version: 1.1.0
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: 'coda'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: R code for possible problems
Result: NOTE
mcgibbsit: no visible global function definition for 'is.mcmc.list'
mcgibbsit: no visible global function definition for 'start'
mcgibbsit: no visible global function definition for 'end'
mcgibbsit: no visible global function definition for 'thin'
mcgibbsit: no visible global function definition for 'nvar'
mcgibbsit: no visible global function definition for 'mcmc'
mcgibbsit: no visible global function definition for 'mcmc.list'
mcgibbsit: no visible global function definition for 'varnames'
mcgibbsit: no visible global function definition for 'qnorm'
mcgibbsit: no visible global function definition for 'niter'
mcgibbsit: no visible global function definition for 'quantile'
mcgibbsit : to.table: no visible global function definition for
'window'
mcgibbsit: no visible global function definition for 'var'
read.mcmc: no visible global function definition for 'mcmc.list'
read.mcmc: no visible global function definition for 'mcmc'
Undefined global functions or variables:
end is.mcmc.list mcmc mcmc.list niter nvar qnorm quantile start thin
var varnames window
Consider adding
importFrom("stats", "end", "qnorm", "quantile", "start", "var",
"window")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'dnzcY3e.1' 'dnzcY3e.2' 'dnzcY3e.3' 'mcmc.1.csv' 'mcmc.10.csv'
'mcmc.11.csv' 'mcmc.12.csv' 'mcmc.13.csv' 'mcmc.14.csv' 'mcmc.15.csv'
'mcmc.16.csv' 'mcmc.17.csv' 'mcmc.18.csv' 'mcmc.19.csv' 'mcmc.2.csv'
'mcmc.20.csv' 'mcmc.3.csv' 'mcmc.4.csv' 'mcmc.5.csv' 'mcmc.6.csv'
'mcmc.7.csv' 'mcmc.8.csv' 'mcmc.9.csv'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: NOTE: 12
Version: 0.9.1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.9.1
Check: compiled code
Result: NOTE
File ‘namespace/libs/namespace.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 12
Version: 1.0.3
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.3
Check: R code for possible problems
Result: NOTE
capture: no visible binding for global variable 'resultText'
restore.session: no visible binding for global variable
'.save.session.packages'
restore.session: no visible binding for global variable
'.save.session.search'
save.session: no visible global function definition for 'dev.list'
save.session: no visible binding for '<<-' assignment to
'.save.session.search'
save.session: no visible binding for '<<-' assignment to
'.save.session.packages'
Undefined global functions or variables:
.save.session.packages .save.session.search dev.list resultText
Consider adding
importFrom("grDevices", "dev.list")
to your NAMESPACE file.
Found the following calls to attach():
File 'session/R/session.R':
attach(sub("file:", "", i))
See section 'Good practice' in '?attach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.3
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'RSession.Rda'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.3
Check: R code for possible problems
Result: NOTE
capture: no visible binding for global variable ‘resultText’
restore.session: no visible binding for global variable
‘.save.session.packages’
restore.session: no visible binding for global variable
‘.save.session.search’
save.session: no visible global function definition for ‘dev.list’
save.session: no visible binding for '<<-' assignment to
‘.save.session.search’
save.session: no visible binding for '<<-' assignment to
‘.save.session.packages’
Undefined global functions or variables:
.save.session.packages .save.session.search dev.list resultText
Consider adding
importFrom("grDevices", "dev.list")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64