g2f: Find and Fill Gaps in Metabolic Networks
For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <http://www.genome.jp/kegg/> is available.
| Version: |
0.2 |
| Imports: |
KEGGREST, minval (≥ 0.5), sybil |
| Published: |
2018-03-18 |
| Author: |
Daniel Osorio [aut, cre],
Kelly Botero [aut],
Janneth Gonzalez [aut, ths],
Andres Pinzon [aut] |
| Maintainer: |
Daniel Osorio <dcosorioh at unal.edu.co> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
g2f results |
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