sybil: Efficient Constrained Based Modelling

This Systems Biology Package (Gelius-Dietrich et. al. (2012) <doi:10.1186/1752-0509-7-125>) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.

Version:	2.2.0
Depends:	R (≥ 3.2.0), Matrix, lattice
Imports:	methods
Suggests:	glpkAPI (≥ 1.2.8), cplexAPI (≥ 1.2.4), clpAPI (≥ 1.2.4), lpSolveAPI (≥ 5.5.2.0), parallel, grid
Published:	2021-05-31
Author:	Mayo Roettger [cre], Gabriel Gelius-Dietrich [aut], C. Jonathan Fritzemeier [ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb]
Maintainer:	Mayo Roettger <mayo.roettger at hhu.de>
License:	GPL-3 | file LICENSE
URL:	https://www.cs.hhu.de/lehrstuehle-und-arbeitsgruppen/computational-cell-biology/software-contributions/sybil
NeedsCompilation:	no
Citation:	sybil citation info
Materials:	README NEWS
CRAN checks:	sybil results

Documentation:

Reference manual:	sybil.pdf
Vignettes:	sybil – Efficient Constrained Based Modelling in R

Downloads:

Package source:	sybil_2.2.0.tar.gz
Windows binaries:	r-devel: sybil_2.2.0.zip, r-release: sybil_2.2.0.zip, r-oldrel: sybil_2.2.0.zip
macOS binaries:	r-release (arm64): sybil_2.2.0.tgz, r-oldrel (arm64): sybil_2.2.0.tgz, r-release (x86_64): sybil_2.2.0.tgz, r-oldrel (x86_64): sybil_2.2.0.tgz
Old sources:	sybil archive

Reverse dependencies:

Reverse depends:	BacArena, GlobalFit, RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA
Reverse imports:	exp2flux, g2f
Reverse suggests:	minval

Linking:

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