sybilcycleFreeFlux: Cycle-Free Flux Balance Analysis (CycleFreeFlux)
Implement cycle-Free flux balance analysis (CycleFreeFlux), cycle-free flux variability, and Random Sampling of solution space.
Desouki, A. A., Jarre, F., Gelius-Dietrich, G., & Lercher, M. J. (2015). CycleFreeFlux: efficient removal of thermodynamically
infeasible loops from flux distributions. Bioinformatics, 31(13), 2159-2165. <doi:10.1093/bioinformatics/btv096>.
Flux balance analysis is a technique to find fluxes in metabolic models at steady state.
It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).
| Version: |
2.0.2 |
| Depends: |
R (≥ 3.0.3), sybil, Matrix, MASS |
| Imports: |
methods |
| Suggests: |
cplexAPI (≥ 1.2.6), glpkAPI (≥ 1.2.1) |
| Published: |
2021-01-13 |
| Author: |
Abdelmoneim Amer Desouki [aut, cre] |
| Maintainer: |
Abdelmoneim Amer Desouki <abdelmoneim.amer at uni-duesseldorf.de> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
sybilcycleFreeFlux results |
Documentation:
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