CRAN Package Check Results for Maintainer Toby Hocking <toby.hocking at r-project.org>

CRAN Package Check Results for Maintainer ‘Toby Hocking <toby.hocking at r-project.org>’

Last updated on 2022-04-24 03:53:06 CEST.

Package	ERROR	NOTE	OK
animint2		6	6
aum			12
binsegRcpp			12
directlabels			12
inlinedocs		1	11
LOPART			12
namedCapture		11	1
nc		11	1
PeakError			12
PeakSegDisk			12
PeakSegDP			12
PeakSegJoint	1		11
PeakSegOptimal			12
penaltyLearning			12
plotHMM			12
WeightedROC			12

Package animint2

Current CRAN status: NOTE: 6, OK: 6

Version: 2022.1.25
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘lazyeval’ ‘tibble’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2022.1.25
Check: Rd cross-references
Result: NOTE
Undeclared package ‘RColorBrewer’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package aum

Current CRAN status: OK: 12

Package inlinedocs

Current CRAN status: NOTE: 1, OK: 11

Version: 2019.12.5
Check: Rd cross-references
Result: NOTE
Undeclared package ‘R.methodsS3’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package LOPART

Current CRAN status: OK: 12

Package namedCapture

Current CRAN status: NOTE: 11, OK: 1

Version: 2020.4.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 're2r'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package nc

Current CRAN status: NOTE: 11, OK: 1

Version: 2020.8.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 're2r'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2022.4.6
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'PeakSegJoint-Ex.R' failed
    The error most likely occurred in:

    > ### Name: PeakSegJointError
    > ### Title: PeakSegJointError
    > ### Aliases: PeakSegJointError
    >
    > ### ** Examples
    >
    >
    > library(PeakSegJoint)
    > data(H3K36me3.TDH.other.chunk1, envir=environment())
    > lims <- c(43000000, 43200000) # left
    > some.counts <-
    + subset(H3K36me3.TDH.other.chunk1$counts,
    + lims[1] < chromEnd & chromStart < lims[2])
    > some.regions <-
    + subset(H3K36me3.TDH.other.chunk1$regions,
    + lims[1] < chromEnd & chromStart < lims[2])
    > fit <- PeakSegJointSeveral(some.counts)
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2022.4.6
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [3s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > suite <- Sys.getenv("TEST_SUITE")
     > if(suite=="")suite <- NULL
     > test_check("PeakSegJoint", filter=suite)
     Loading required package: PeakSegJoint
Flavor: r-oldrel-windows-ix86+x86_64

Package PeakSegOptimal

Current CRAN status: OK: 12

Package penaltyLearning

Current CRAN status: OK: 12

Package plotHMM

Current CRAN status: OK: 12

Package WeightedROC

Current CRAN status: OK: 12